Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cardiovascular
Cell type
Heart Ventricles
MeSH Description
The lower right and left chambers of the heart. The right ventricle pumps venous BLOOD into the LUNGS and the left ventricle pumps oxygenated blood into the systemic arterial circulation.

Attributes by original data submitter

Sample

sex
female
tissue
heart left ventricle
lab
Michael Snyder, Stanford
sample_type
tissue
age
53 year
donor ID
ENCDO793LXB
dev_stage
adult

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/cc0fee99-edee-480d-a7ce-887b4910f895/@@download/attachment/Tissue%20ChIP-Seq%20Biorupter%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
45856508
Reads aligned (%)
98.1
Duplicates removed (%)
47.1
Number of peaks
41522 (qval < 1E-05)

hg19

Number of total reads
45856508
Reads aligned (%)
97.4
Duplicates removed (%)
47.5
Number of peaks
40738 (qval < 1E-05)

Base call quality data from DBCLS SRA